Microbiology Methods for ERP Review 3-2020

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GENE-UP SLM Matrix Extension

June 19, 2017

Table 1. Inclusivity List for the GENE ‐ UP Salmonella modification Strain # Stock collection # Salmonella enterica Serotype Antigenic Properties

Source

Origin

Result

1 2 3 4 5 6 7 8 9

SAFE 1 SAFE 2 SAFE 3 SAFE 4 SAFE 5 SAFE 6 SAFE 7 SAFE 8 SAFE 9 SAFE 10 SAFE 11 SAFE 12 SAFE 13 SAFE 14 SAFE 15 SAFE 16 SAFE 17 SAFE 18 SAFE 19 SAFE 20 SAFE 21 SAFE 22 SAFE 23 SAFE 24 SAFE 25 SAFE 26 SAFE 27 SAFE 28 SAFE 29 SAFE 30 SAFE 31 SAFE 32 SAFE 33 SAFE 34 SAFE 35 SAFE 36 SAFE 37 SAFE 38 SAFE 39 SAFE 40

Newport Enteritidis Heidelberg

6,8,20:d:1,2 1,9,12:g,m

CFSAN a CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN CFSAN

Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown

Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive Positive

1,4, [5],12:r:1,2 1,4, [5],12:i:1,3 9,12[Vi]:d:[j],[z66]

Typhimurium

Typhi

4, 5, 12:b: ‐ 

4, 5, 12:b: ‐  6,8:z10:e,n,x 6,7,14:r:1,2

Hadar

Virchow

Brandenburg

4,[5],12:1,v:e,n,z15 II 58:I, z13, z28:z7

10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40

II 58:I, z13, z28:z6

II 47:d:z39 II 48:d:z6 II 50:b:z6

II 47:d:z40 II 48:d:z7 II 50:b:z7

II 53:Iz28, z39 II 39:Iz28:enx II 13,22:z29:enx II 18:z4,z23: ‐  IIIa 41:z4,z23: ‐  IIIa 40:z4,z23: ‐  IIIa 48:g,z51: ‐  IIIa 21:g,z51: ‐  IIIa 51:g,z51: ‐  IIIa 62:g,z51: ‐  II 4, 12:b: ‐ 

II 53:Iz28, z40 II 39:Iz28:enx II 13,22:z29:enx II 18:z4,z23: ‐  IIIa 41:z4,z23: ‐  IIIa 40:z4,z23: ‐  IIIa 48:g,z51: ‐  IIIa 21:g,z51: ‐  IIIa 51:g,z51: ‐  IIIa 62:g,z51: ‐  II 4, 12:b: ‐ 

IIIa 48:z4,z23, z32: ‐  IIIa 48:z4,z23: ‐  IIIb 60:r:e,n,x,z15

IIIa 48:z4,z23, z32: ‐  IIIa 48:z4,z23: ‐  IIIb 60:r:e,n,x,z16

IIIb 48:i:z

IIIb 48:i:z

IIIb 61:k:1,5,(7) IIIb 61:I,v:1,5,7

IIIb 61:k:1,5,(7) IIIb 61:I,v:1,5,8

IIIb 48:z10:e,n,x,z15

IIIb 48:z10:e,n,x,z16

IIIb 38:z10:z53

IIIb 38:z10:z54

IIIb 60:r:z IIIb 50:r:z

IIIb 60:r:z IIIb 50:r:z

IV 50:g,z51: ‐  IV 48:g,z51: ‐  IV 44:z4,z23: ‐  IV 45:g:z4,z23: ‐  IV 16:z4,z32: ‐  IV 11:z4,z23: ‐ 

IV 50:g,z51: ‐  IV 48:g,z51: ‐  IV 44:z4,z23: ‐  IV 45:g:z4,z23: ‐  IV 16:z4,z32: ‐  IV 11:z4,z23: ‐ 

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